API Reference#

Core Modules#

wags_tails.base_source

Define core data source classes.

wags_tails.custom

Provide data acquisition class for custom data acquisition needs.

Data Sources#

wags_tails.chembl

Provide source fetching for ChEMBL.

wags_tails.chemidplus

Provide source fetching for ChemIDplus.

wags_tails.do

Provide source fetching for Human Disease Ontology.

wags_tails.drugbank

Provide source fetching for DrugBank.

wags_tails.drugsatfda

Provide source fetching for Drugs@FDA.

wags_tails.ensembl

Provide data management for Ensembl genomic data.

wags_tails.ensembl_transcript_mappings

Fetches transcript mapping data from Ensembl BioMart.

wags_tails.guide_to_pharmacology

Provide source fetching for Guide To Pharmacology.

wags_tails.hemonc

Provide source fetching for HemOnc.

wags_tails.hgnc

Provide data fetching for HGNC.

wags_tails.mondo

Provide source fetching for Mondo Disease Ontology.

wags_tails.ncbi

Provide data fetching for NCBI gene data sources.

wags_tails.ncbi_lrg_refseqgene

Fetches NCBI LRG_RefSeqGene data.

wags_tails.ncbi_mane_summary

Fetches NCBI MANE summary data.

wags_tails.ncit

Provide source fetching for NCI Thesaurus.

wags_tails.oncotree

Provide access to Oncotree data.

wags_tails.rxnorm

Provide source fetching for RxNorm.

Utilities#

wags_tails.utils.downloads

Provide helper functions for downloading data.

wags_tails.utils.storage

Provide helpful functions for managing data storage.

wags_tails.utils.versioning

Basic utilities pertaining to data versioning.