wags_tails.guide_to_pharmacology#
Provide source fetching for Guide To Pharmacology.
- class wags_tails.guide_to_pharmacology.GtoPLigandPaths(ligands: Path, ligand_id_mapping: Path)[source]#
Container for GuideToPharmacology file paths.
- class wags_tails.guide_to_pharmacology.GToPLigandData(data_dir=None, silent=True)[source]#
Provide access to Guide to Pharmacology data.
- get_latest(from_local=False, force_refresh=False)[source]#
Get path to latest version of data, and its version value
- Parameters:
from_local (
bool
) – if True, use latest available local fileforce_refresh (
bool
) – if True, fetch and return data from remote regardless of whether a local copy is present
- Return type:
Tuple
[GtoPLigandPaths
,str
]- Returns:
Paths to data, and version value of it
- Raises:
ValueError – if both
force_refresh
andfrom_local
are True
- __init__(data_dir=None, silent=True)[source]#
Set common class parameters.
- Parameters:
data_dir (
Optional
[Path
]) – direct location to store data files in, if specified. Seeget_data_dir()
in thestorage_utils
module for further configuration details.silent (
bool
) – if True, don’t print any info/updates to console